3D structure

PDB id
8P9A (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Methyllissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
AAUAAUG*CUAU
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8P9A_073 not in the Motif Atlas
Homologous match to IL_8P9A_302
Geometric discrepancy: 0.0589
The information below is about IL_8P9A_302
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_22829.2
Basepair signature
cWW-L-tHS-L-R-L-cWW-L
Number of instances in this motif group
3

Unit IDs

8P9A|1|1|A|1883
8P9A|1|1|A|1884
8P9A|1|1|U|1885
8P9A|1|1|A|1886
8P9A|1|1|A|1887
8P9A|1|1|U|1888
8P9A|1|1|G|1889
*
8P9A|1|1|C|2346
8P9A|1|1|U|2347
8P9A|1|1|A|2348
8P9A|1|1|U|2349

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain AE
60S ribosomal protein L31-A
Chain k
60S ribosomal protein L3
Chain x
60S ribosomal protein L17-A

Coloring options:


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