IL_8P9A_083

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8P9A|1|1|U|2159, 8P9A|1|1|U|2175, 8P9A|1|1|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P9A_083 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.0729

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8P9A|1|1|C|2156
8P9A|1|1|G|2157
8P9A|1|1|A|2158
8P9A|1|1|U|2159
8P9A|1|1|G|2160
8P9A|1|1|G|2161
*
8P9A|1|1|U|2173
8P9A|1|1|G|2174
8P9A|1|1|U|2175
8P9A|1|1|U|2176
8P9A|1|1|G|2177
8P9A|1|1|A|2178
8P9A|1|1|C|2179
8P9A|1|1|G|2180

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AQ

60S ribosomal protein L43-A

Chain j

60S ribosomal protein L2-A