IL_8P9A_198

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

8P9A|1|A|C|1158, 8P9A|1|A|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P9A_198 not in the Motif Atlas

Homologous match to IL_8C3A_449

Geometric discrepancy: 0.1186

The information below is about IL_8C3A_449

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.10

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

16

Unit IDs

8P9A|1|A|A|1157
8P9A|1|A|C|1158
8P9A|1|A|C|1159
8P9A|1|A|A|1160
*
8P9A|1|A|U|1617
8P9A|1|A|C|1618
8P9A|1|A|C|1619
8P9A|1|A|C|1620
8P9A|1|A|U|1621

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S5

Chain R

40S ribosomal protein S16-A

Chain d

40S ribosomal protein S28-A