IL_8PKL_070

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8PKL|1|7|A|1801, 8PKL|1|7|C|1816, 8PKL|1|7|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PKL_070 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0648

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8PKL|1|7|U|1798
8PKL|1|7|G|1799
8PKL|1|7|C|1800
8PKL|1|7|A|1801
8PKL|1|7|A|1802
8PKL|1|7|A|1803
8PKL|1|7|C|1804
*
8PKL|1|7|G|1813
8PKL|1|7|G|1814
8PKL|1|7|A|1815
8PKL|1|7|C|1816
8PKL|1|7|G|1817
8PKL|1|7|U|1818
8PKL|1|7|A|1819
8PKL|1|7|U|1820
8PKL|1|7|A|1821

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2