IL_8PKL_076
3D structure
- PDB id
- 8PKL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 8PKL|1|7|A|1938, 8PKL|1|7|U|1944, 8PKL|1|7|U|1963
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PKL_076 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.1461
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
8PKL|1|7|C|1934
8PKL|1|7|G|1935
8PKL|1|7|A|1936
8PKL|1|7|A|1937
8PKL|1|7|A|1938
8PKL|1|7|5MU|1939
8PKL|1|7|U|1940
8PKL|1|7|C|1941
8PKL|1|7|C|1942
8PKL|1|7|U|1943
8PKL|1|7|U|1944
8PKL|1|7|G|1945
*
8PKL|1|7|C|1961
8PKL|1|7|5MC|1962
8PKL|1|7|U|1963
8PKL|1|7|G|1964
Current chains
- Chain 7
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain Y
- Transfer RNA; tRNA
- Chain b
- 50S ribosomal protein L2
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