IL_8PKL_152

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

8PKL|1|A|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PKL_152 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0857

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8PKL|1|A|U|684
8PKL|1|A|G|685
8PKL|1|A|U|686
8PKL|1|A|A|687
8PKL|1|A|G|688
*
8PKL|1|A|C|699
8PKL|1|A|G|700
8PKL|1|A|U|701
8PKL|1|A|A|702
8PKL|1|A|G|703
8PKL|1|A|A|704
8PKL|1|A|G|705
8PKL|1|A|A|706

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 7

Large subunit ribosomal RNA; LSU rRNA

Chain K

Small ribosomal subunit protein uS11