IL_8PV4_074
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AACAA(OMU)G*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV4_074 not in the Motif Atlas
- Homologous match to IL_8C3A_080
- Geometric discrepancy: 0.0856
- The information below is about IL_8C3A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
8PV4|1|C1|A|1863
8PV4|1|C1|A|1864
8PV4|1|C1|C|1865
8PV4|1|C1|A|1866
8PV4|1|C1|A|1867
8PV4|1|C1|OMU|1868
8PV4|1|C1|G|1869
*
8PV4|1|C1|C|2309
8PV4|1|C1|U|2310
8PV4|1|C1|A|2311
8PV4|1|C1|U|2312
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain Ld
- Putative 60S ribosomal protein
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