IL_8PV4_101

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_101 not in the Motif Atlas

Geometric match to IL_1MZP_003

Geometric discrepancy: 0.1903

The information below is about IL_1MZP_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

8PV4|1|C1|G|2429
8PV4|1|C1|G|2430
8PV4|1|C1|A|2431
8PV4|1|C1|G|2432
*
8PV4|1|C1|C|2439
8PV4|1|C1|G|2440
8PV4|1|C1|C|2441
8PV4|1|C1|C|2442
8PV4|1|C1|A|2443
8PV4|1|C1|G|2444
8PV4|1|C1|U|2445
8PV4|1|C1|G|2446
8PV4|1|C1|A|2447
8PV4|1|C1|A|2448
8PV4|1|C1|A|2449
8PV4|1|C1|U|2450
8PV4|1|C1|A|2451
8PV4|1|C1|C|2452

Current chains

Chain C1

26S rRNA

Nearby chains

Chain Lr

Ribosomal protein