IL_8PV4_122

3D structure

PDB id

8PV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

8PV4|1|C1|C|3050

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PV4_122 not in the Motif Atlas

Homologous match to IL_5TBW_117

Geometric discrepancy: 0.0899

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8PV4|1|C1|U|3005
8PV4|1|C1|A|3006
8PV4|1|C1|A|3007
8PV4|1|C1|U|3008
8PV4|1|C1|U|3009
*
8PV4|1|C1|A|3049
8PV4|1|C1|C|3050
8PV4|1|C1|C|3051
8PV4|1|C1|A|3052

Current chains

Chain C1

26S rRNA

Nearby chains

Chain CQ

Ribosome biogenesis protein RLP24

Chain LB

60S ribosomal protein L3-like protein

Chain LV

60S ribosomal protein l23-like protein