IL_8PV4_123
3D structure
- PDB id
- 8PV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUUUG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 8PV4|1|C1|U|3014, 8PV4|1|C1|U|3016
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PV4_123 not in the Motif Atlas
- Homologous match to IL_8C3A_127
- Geometric discrepancy: 0.1077
- The information below is about IL_8C3A_127
- Detailed Annotation
- UAA/GAN related
- Broad Annotation
- UAA/GAN related
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8PV4|1|C1|U|3012
8PV4|1|C1|U|3013
8PV4|1|C1|U|3014
8PV4|1|C1|U|3015
8PV4|1|C1|U|3016
8PV4|1|C1|G|3017
*
8PV4|1|C1|C|3042
8PV4|1|C1|G|3043
8PV4|1|C1|A|3044
8PV4|1|C1|A|3045
8PV4|1|C1|G|3046
Current chains
- Chain C1
- 26S rRNA
Nearby chains
- Chain CQ
- Ribosome biogenesis protein RLP24
- Chain Cb
- Zinc finger domain-containing protein
- Chain LB
- 60S ribosomal protein L3-like protein
- Chain Ld
- Putative 60S ribosomal protein
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