IL_8QCQ_074
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCCG
- Length
- 16 nucleotides
- Bulged bases
- 8QCQ|1|A|A|1967, 8QCQ|1|A|U|1973, 8QCQ|1|A|C|1992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QCQ_074 not in the Motif Atlas
- Homologous match to IL_4WF9_077
- Geometric discrepancy: 0.0989
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
8QCQ|1|A|C|1963
8QCQ|1|A|G|1964
8QCQ|1|A|A|1965
8QCQ|1|A|A|1966
8QCQ|1|A|A|1967
8QCQ|1|A|U|1968
8QCQ|1|A|U|1969
8QCQ|1|A|C|1970
8QCQ|1|A|C|1971
8QCQ|1|A|U|1972
8QCQ|1|A|U|1973
8QCQ|1|A|G|1974
*
8QCQ|1|A|C|1990
8QCQ|1|A|C|1991
8QCQ|1|A|C|1992
8QCQ|1|A|G|1993
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain y
- Transfer RNA; tRNA
Coloring options: