IL_8QRK_015
3D structure
- PDB id
- 8QRK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.69 Å
Loop
- Sequence
- GUGCCAG*CGGUCACAC
- Length
- 16 nucleotides
- Bulged bases
- 8QRK|1|A|C|904, 8QRK|1|A|C|906
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QRK_015 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1014
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8QRK|1|A|G|887
8QRK|1|A|U|888
8QRK|1|A|G|889
8QRK|1|A|C|890
8QRK|1|A|C|891
8QRK|1|A|A|892
8QRK|1|A|G|893
*
8QRK|1|A|C|900
8QRK|1|A|G|901
8QRK|1|A|G|902
8QRK|1|A|U|903
8QRK|1|A|C|904
8QRK|1|A|A|905
8QRK|1|A|C|906
8QRK|1|A|A|907
8QRK|1|A|C|908
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain D
- 28S ribosomal protein S5, mitochondrial
- Chain G
- 28S ribosomal protein S9, mitochondrial
- Chain J
- 28S ribosomal protein S12, mitochondrial
- Chain Z
- 28S ribosomal protein S33, mitochondrial
Coloring options: