IL_8QRL_015

3D structure

PDB id

8QRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GUGCCAG*CGGUCACAC

Length

16 nucleotides

Bulged bases

8QRL|1|A|C|904, 8QRL|1|A|C|906, 8QRL|1|A|A|907

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QRL_015 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1326

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8QRL|1|A|G|887
8QRL|1|A|U|888
8QRL|1|A|G|889
8QRL|1|A|C|890
8QRL|1|A|C|891
8QRL|1|A|A|892
8QRL|1|A|G|893
*
8QRL|1|A|C|900
8QRL|1|A|G|901
8QRL|1|A|G|902
8QRL|1|A|U|903
8QRL|1|A|C|904
8QRL|1|A|A|905
8QRL|1|A|C|906
8QRL|1|A|A|907
8QRL|1|A|C|908

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain D

28S ribosomal protein S5, mitochondrial

Chain J

28S ribosomal protein S12, mitochondrial