IL_8QRL_017
3D structure
- PDB id
- 8QRL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- UUUUA*UGAACA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QRL_017 not in the Motif Atlas
- Geometric match to IL_5TBW_063
- Geometric discrepancy: 0.2565
- The information below is about IL_5TBW_063
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8QRL|1|A|U|946
8QRL|1|A|U|947
8QRL|1|A|U|948
8QRL|1|A|U|949
8QRL|1|A|A|950
*
8QRL|1|A|U|1044
8QRL|1|A|G|1045
8QRL|1|A|A|1046
8QRL|1|A|A|1047
8QRL|1|A|C|1048
8QRL|1|A|A|1049
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain J
- 28S ribosomal protein S12, mitochondrial
- Chain L
- 28S ribosomal protein S15, mitochondrial
- Chain N
- 28S ribosomal protein S17, mitochondrial
- Chain T
- 28S ribosomal protein S25, mitochondrial
Coloring options: