IL_8QU5_004

3D structure

PDB id

8QU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QU5_004 not in the Motif Atlas

Homologous match to IL_5J7L_257

Geometric discrepancy: 0.084

The information below is about IL_5J7L_257

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8QU5|1|A|C|1845
8QU5|1|A|C|1846
8QU5|1|A|U|1847
*
8QU5|1|A|A|1856
8QU5|1|A|U|1857
8QU5|1|A|G|1858

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

39S ribosomal protein L15, mitochondrial

Chain R

39S ribosomal protein L20, mitochondrial

Chain S

39S ribosomal protein L21, mitochondrial