IL_8QYX_011

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

AAGAC*GUCUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_011 not in the Motif Atlas

Geometric match to IL_8P9A_349

Geometric discrepancy: 0.3649

The information below is about IL_8P9A_349

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8QYX|1|A2|A|162
8QYX|1|A2|A|163
8QYX|1|A2|G|164
8QYX|1|A2|A|165
8QYX|1|A2|C|166
*
8QYX|1|A2|G|269
8QYX|1|A2|U|270
8QYX|1|A2|C|271
8QYX|1|A2|U|272
8QYX|1|A2|U|273

Current chains

Chain A2

28S rRNA

Nearby chains

Chain F1

60S ribosomal protein L13

Chain b1

60S ribosomal protein L35

Chain c1

60S ribosomal protein L36