3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
CUCAUCAG*CUGGAG
Length
14 nucleotides
Bulged bases
8QYX|1|A2|U|1930, 8QYX|1|A2|C|1931, 8QYX|1|A2|G|2055, 8QYX|1|A2|A|2057
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8QYX_074 not in the Motif Atlas
Homologous match to IL_8C3A_054
Geometric discrepancy: 0.2383
The information below is about IL_8C3A_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_27086.1
Basepair signature
cWW-tWW-L-tWW-cWW-L
Number of instances in this motif group
2

Unit IDs

8QYX|1|A2|C|1926
8QYX|1|A2|U|1927
8QYX|1|A2|C|1928
8QYX|1|A2|A|1929
8QYX|1|A2|U|1930
8QYX|1|A2|C|1931
8QYX|1|A2|A|1932
8QYX|1|A2|G|1933
*
8QYX|1|A2|C|2053
8QYX|1|A2|U|2054
8QYX|1|A2|G|2055
8QYX|1|A2|G|2056
8QYX|1|A2|A|2057
8QYX|1|A2|G|2058

Current chains

Chain A2
28S rRNA

Nearby chains

Chain C1
60S ribosomal protein L9
Chain G1
60S ribosomal protein L14
Chain I1
60S ribosomal protein L13a
Chain M1
60S ribosomal protein L18a
Chain g1
Large ribosomal subunit protein eL40

Coloring options:


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