IL_8QYX_083

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_083 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0739

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8QYX|1|A2|G|2358
8QYX|1|A2|U|2359
8QYX|1|A2|A|2360
8QYX|1|A2|G|2361
8QYX|1|A2|U|2362
8QYX|1|A2|A2M|2363
8QYX|1|A2|OMG|2364
*
8QYX|1|A2|C|3858
8QYX|1|A2|G|3859
8QYX|1|A2|A|3860
8QYX|1|A2|A|3861
8QYX|1|A2|A|3862
8QYX|1|A2|C|3863

Current chains

Chain A2

28S rRNA

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain F2

60S ribosomal protein L4

Chain J1

60S ribosomal protein L17