IL_8QYX_085

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

(OMU)GAAC*GAA

Length

8 nucleotides

Bulged bases

8QYX|1|A2|A|2428

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_085 not in the Motif Atlas

Homologous match to IL_8C3A_482

Geometric discrepancy: 0.3412

The information below is about IL_8C3A_482

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_04395.1

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

3

Unit IDs

8QYX|1|A2|OMU|2415
8QYX|1|A2|G|2416
8QYX|1|A2|A|2417
8QYX|1|A2|A|2418
8QYX|1|A2|C|2419
*
8QYX|1|A2|G|2427
8QYX|1|A2|A|2428
8QYX|1|A2|A|2429

Current chains

Chain A2

28S rRNA

Nearby chains

Chain J1

60S ribosomal protein L17

Chain L1

60S ribosomal protein L19

Chain f1

60S ribosomal protein L39