IL_8QYX_126
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- U(PSU)GA*(PSU)ACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QYX_126 not in the Motif Atlas
- Homologous match to IL_8P9A_327
- Geometric discrepancy: 0.2731
- The information below is about IL_8P9A_327
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
8QYX|1|A2|U|4295
8QYX|1|A2|PSU|4296
8QYX|1|A2|G|4297
8QYX|1|A2|A|4298
*
8QYX|1|A2|PSU|4312
8QYX|1|A2|A|4313
8QYX|1|A2|C|4314
8QYX|1|A2|A|4315
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain G2
- 60S ribosomal protein L5
- Chain K1
- 60S ribosomal protein L18
- Chain N1
- 60S ribosomal protein L21
- Chain V1
- 60S ribosomal protein L29
- Chain i1
- 60S ribosomal protein L36a
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