IL_8QYX_144
3D structure
- PDB id
- 8QYX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.78 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8QYX_144 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.1075
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8QYX|1|A2|C|4596
8QYX|1|A2|U|4597
8QYX|1|A2|C|4598
8QYX|1|A2|A|4599
8QYX|1|A2|G|4600
8QYX|1|A2|U|4601
8QYX|1|A2|A|4602
8QYX|1|A2|C|4603
*
8QYX|1|A2|G|4608
8QYX|1|A2|G|4609
8QYX|1|A2|A|4610
8QYX|1|A2|A|4611
8QYX|1|A2|C|4612
8QYX|1|A2|C|4613
8QYX|1|A2|G|4614
Current chains
- Chain A2
- 28S rRNA
Nearby chains
- Chain C1
- 60S ribosomal protein L9
- Chain E2
- Large ribosomal subunit protein uL3
- Chain P1
- 60S ribosomal protein L23
- Chain g1
- Large ribosomal subunit protein eL40
Coloring options: