IL_8QYX_146

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

UGUAU(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

8QYX|1|A2|U|4634, 8QYX|1|A2|U|4636

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_146 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.2759

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8QYX|1|A2|U|4632
8QYX|1|A2|G|4633
8QYX|1|A2|U|4634
8QYX|1|A2|A|4635
8QYX|1|A2|U|4636
8QYX|1|A2|OMG|4637
*
8QYX|1|A2|C|4662
8QYX|1|A2|G|4663
8QYX|1|A2|A|4664
8QYX|1|A2|A|4665
8QYX|1|A2|G|4666

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain Q1

60S ribosomal protein L24

Chain X1

60S ribosomal protein L31