IL_8QYX_161

3D structure

PDB id

8QYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.78 Å

Loop

Sequence

G(PSU)U*GUCAGC

Length

9 nucleotides

Bulged bases

8QYX|1|A2|G|5049

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8QYX_161 not in the Motif Atlas

Homologous match to IL_8P9A_359

Geometric discrepancy: 0.1746

The information below is about IL_8P9A_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00086.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8QYX|1|A2|G|5000
8QYX|1|A2|PSU|5001
8QYX|1|A2|U|5002
*
8QYX|1|A2|G|5045
8QYX|1|A2|U|5046
8QYX|1|A2|C|5047
8QYX|1|A2|A|5048
8QYX|1|A2|G|5049
8QYX|1|A2|C|5050

Current chains

Chain A2

28S rRNA

Nearby chains

Chain E2

Large ribosomal subunit protein uL3

Chain X1

60S ribosomal protein L31