IL_8R3V_070

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8R3V|1|72|A|1801, 8R3V|1|72|C|1816, 8R3V|1|72|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R3V_070 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0716

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8R3V|1|72|U|1798
8R3V|1|72|G|1799
8R3V|1|72|C|1800
8R3V|1|72|A|1801
8R3V|1|72|A|1802
8R3V|1|72|A|1803
8R3V|1|72|C|1804
*
8R3V|1|72|G|1813
8R3V|1|72|G|1814
8R3V|1|72|A|1815
8R3V|1|72|C|1816
8R3V|1|72|G|1817
8R3V|1|72|U|1818
8R3V|1|72|A|1819
8R3V|1|72|U|1820
8R3V|1|72|A|1821

Current chains

Chain 72

23S ribosomal RNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain b2

50S ribosomal protein L2