IL_8R3V_246

3D structure

PDB id

8R3V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (non-rotated disome interface)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R3V_246 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1184

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8R3V|1|A2|C|1303
8R3V|1|A2|G|1304
8R3V|1|A2|G|1305
8R3V|1|A2|A|1306
8R3V|1|A2|U|1307
8R3V|1|A2|U|1308
*
8R3V|1|A2|A|1329
8R3V|1|A2|U|1330
8R3V|1|A2|G|1331
8R3V|1|A2|A|1332
8R3V|1|A2|A|1333
8R3V|1|A2|G|1334

Current chains

Chain A2

16S ribosomal RNA

Nearby chains

Chain M2

Small ribosomal subunit protein uS13