IL_8R55_024
3D structure
- PDB id
- 8R55 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacillus subtilis MutS2-collided disome complex (stalled 70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.57 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8R55|1|A|A|541, 8R55|1|A|U|543
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8R55_024 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.3543
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8R55|1|A|G|524
8R55|1|A|U|525
8R55|1|A|G|526
8R55|1|A|C|527
8R55|1|A|C|528
8R55|1|A|A|529
8R55|1|A|G|530
*
8R55|1|A|C|537
8R55|1|A|G|538
8R55|1|A|G|539
8R55|1|A|U|540
8R55|1|A|A|541
8R55|1|A|A|542
8R55|1|A|U|543
8R55|1|A|A|544
8R55|1|A|C|545
Current chains
- Chain A
- 16S rRNA (1533-MER)
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain C
- 30S ribosomal protein S3
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
- Chain V
- mRNA (33-MER)
Coloring options: