IL_8R55_151

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

8R55|1|X|A|1967, 8R55|1|X|U|1973, 8R55|1|X|C|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8R55_151 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1621

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

8R55|1|X|C|1963
8R55|1|X|G|1964
8R55|1|X|A|1965
8R55|1|X|A|1966
8R55|1|X|A|1967
8R55|1|X|U|1968
8R55|1|X|U|1969
8R55|1|X|C|1970
8R55|1|X|C|1971
8R55|1|X|U|1972
8R55|1|X|U|1973
8R55|1|X|G|1974
*
8R55|1|X|C|1990
8R55|1|X|C|1991
8R55|1|X|C|1992
8R55|1|X|G|1993

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Z

Large ribosomal subunit protein uL2