IL_8RDV_018
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CCU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_018 not in the Motif Atlas
- Geometric match to IL_5J7L_257
- Geometric discrepancy: 0.0562
- The information below is about IL_5J7L_257
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
8RDV|1|Z2|C|549
8RDV|1|Z2|C|550
8RDV|1|Z2|U|551
*
8RDV|1|Z2|A|560
8RDV|1|Z2|U|561
8RDV|1|Z2|G|562
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain E9
- Large ribosomal subunit protein uL4
- Chain Kd
- Large ribosomal subunit protein uL15
- Chain PO
- Large ribosomal subunit protein bL20
- Chain Qb
- Large ribosomal subunit protein bL21
- Chain aA
- Large ribosomal subunit protein bL32
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