IL_8RDV_024
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGAAAG*CCGGAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_024 not in the Motif Atlas
- Homologous match to IL_7A0S_018
- Geometric discrepancy: 0.1109
- The information below is about IL_7A0S_018
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_57885.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
8RDV|1|Z2|U|688
8RDV|1|Z2|G|689
8RDV|1|Z2|A|690
8RDV|1|Z2|A|691
8RDV|1|Z2|A|692
8RDV|1|Z2|G|693
*
8RDV|1|Z2|C|708
8RDV|1|Z2|C|709
8RDV|1|Z2|G|710
8RDV|1|Z2|G|711
8RDV|1|Z2|A|712
8RDV|1|Z2|G|713
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Cl
- Large ribosomal subunit protein uL2
Coloring options: