IL_8RDV_040

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAAGUG*CUCAAA

Length

13 nucleotides

Bulged bases

8RDV|1|Z2|C|1126, 8RDV|1|Z2|A|1128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_040 not in the Motif Atlas

Geometric match to IL_5J7L_280

Geometric discrepancy: 0.05

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8RDV|1|Z2|U|1002
8RDV|1|Z2|U|1003
8RDV|1|Z2|A|1004
8RDV|1|Z2|A|1005
8RDV|1|Z2|G|1006
8RDV|1|Z2|U|1007
8RDV|1|Z2|G|1008
*
8RDV|1|Z2|C|1124
8RDV|1|Z2|U|1125
8RDV|1|Z2|C|1126
8RDV|1|Z2|A|1127
8RDV|1|Z2|A|1128
8RDV|1|Z2|A|1129

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain IX

Large ribosomal subunit protein uL13

Chain ep

Large ribosomal subunit protein bL36