IL_8RDV_042
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GAGG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 8RDV|1|Z2|G|1017
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_042 not in the Motif Atlas
- Homologous match to IL_5J7L_282
- Geometric discrepancy: 0.097
- The information below is about IL_5J7L_282
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_57744.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
8RDV|1|Z2|G|1015
8RDV|1|Z2|A|1016
8RDV|1|Z2|G|1017
8RDV|1|Z2|G|1018
*
8RDV|1|Z2|C|1105
8RDV|1|Z2|G|1106
8RDV|1|Z2|C|1107
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain D8
- 5S ribosomal RNA; 5S rRNA
- Chain IX
- Large ribosomal subunit protein uL13
- Chain Lg
- Large ribosomal subunit protein uL16
- Chain ep
- Large ribosomal subunit protein bL36
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