IL_8RDV_069

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AUG*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_069 not in the Motif Atlas

Geometric match to IL_364D_004

Geometric discrepancy: 0.2569

The information below is about IL_364D_004

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8RDV|1|Z2|A|1702
8RDV|1|Z2|U|1703
8RDV|1|Z2|G|1704
*
8RDV|1|Z2|U|1728
8RDV|1|Z2|U|1729
8RDV|1|Z2|U|1730

Current chains

Chain Z2

23S rRNA

Nearby chains