IL_8RDV_103
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGUUC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 8RDV|1|Z2|U|2672, 8RDV|1|Z2|U|2673
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_103 not in the Motif Atlas
- Homologous match to IL_5J7L_348
- Geometric discrepancy: 0.0744
- The information below is about IL_5J7L_348
- Detailed Annotation
- UAA/GAN related, with intercalation
- Broad Annotation
- UAA/GAN related, with intercalation
- Motif group
- IL_23774.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
8RDV|1|Z2|U|2670
8RDV|1|Z2|G|2671
8RDV|1|Z2|U|2672
8RDV|1|Z2|U|2673
8RDV|1|Z2|C|2674
*
8RDV|1|Z2|G|2701
8RDV|1|Z2|G|2702
8RDV|1|Z2|U|2703
8RDV|1|Z2|A|2704
8RDV|1|Z2|G|2705
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Af
- Large ribosomal subunit protein uL3
- Chain MB
- Large ribosomal subunit protein bL17
- Chain Oi
- Large ribosomal subunit protein bL19
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