IL_8RDV_133
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8RDV|1|iN|A|575, 8RDV|1|iN|U|577, 8RDV|1|iN|A|578
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_133 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.1175
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8RDV|1|iN|G|558
8RDV|1|iN|U|559
8RDV|1|iN|G|560
8RDV|1|iN|C|561
8RDV|1|iN|C|562
8RDV|1|iN|A|563
8RDV|1|iN|G|564
*
8RDV|1|iN|C|571
8RDV|1|iN|G|572
8RDV|1|iN|G|573
8RDV|1|iN|U|574
8RDV|1|iN|A|575
8RDV|1|iN|A|576
8RDV|1|iN|U|577
8RDV|1|iN|A|578
8RDV|1|iN|C|579
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain B
- Methyl-accepting chemotaxis protein
- Chain CT
- Small ribosomal subunit protein uS3
- Chain Dm
- Small ribosomal subunit protein uS4
- Chain L6
- Small ribosomal subunit protein uS12
Coloring options: