IL_8RDV_138
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UGAAAUCC*GAACUG
- Length
- 14 nucleotides
- Bulged bases
- 8RDV|1|iN|U|675
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_138 not in the Motif Atlas
- Homologous match to IL_5J7L_030
- Geometric discrepancy: 0.0866
- The information below is about IL_5J7L_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8RDV|1|iN|U|648
8RDV|1|iN|G|649
8RDV|1|iN|A|650
8RDV|1|iN|A|651
8RDV|1|iN|A|652
8RDV|1|iN|U|653
8RDV|1|iN|C|654
8RDV|1|iN|C|655
*
8RDV|1|iN|G|671
8RDV|1|iN|A|672
8RDV|1|iN|A|673
8RDV|1|iN|C|674
8RDV|1|iN|U|675
8RDV|1|iN|G|677
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain BQ
- Small ribosomal subunit protein uS8
- Chain Dm
- Small ribosomal subunit protein uS4
- Chain Pj
- Small ribosomal subunit protein bS16
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