IL_8RDV_143

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

8RDV|1|iN|A|746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_143 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0748

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8RDV|1|iN|U|728
8RDV|1|iN|G|729
8RDV|1|iN|U|730
8RDV|1|iN|A|731
8RDV|1|iN|G|732
*
8RDV|1|iN|C|743
8RDV|1|iN|G|744
8RDV|1|iN|U|745
8RDV|1|iN|A|746
8RDV|1|iN|G|747
8RDV|1|iN|A|748
8RDV|1|iN|G|749
8RDV|1|iN|A|750

Current chains

Chain iN

16S rRNA

Nearby chains

Chain KU

Small ribosomal subunit protein uS11

Chain Z2

Large subunit ribosomal RNA; LSU rRNA