IL_8RDV_170

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAGAAG*CCACG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_170 not in the Motif Atlas

Homologous match to IL_5J7L_063

Geometric discrepancy: 0.0923

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8RDV|1|iN|C|1475
8RDV|1|iN|A|1476
8RDV|1|iN|G|1477
8RDV|1|iN|A|1478
8RDV|1|iN|A|1479
8RDV|1|iN|G|1480
*
8RDV|1|iN|C|1511
8RDV|1|iN|C|1512
8RDV|1|iN|A|1513
8RDV|1|iN|C|1514
8RDV|1|iN|G|1515

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Oi

Large ribosomal subunit protein bL19

Chain To

Small ribosomal subunit protein bS20

Chain Z2

Large subunit ribosomal RNA; LSU rRNA