IL_8RJC_086
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- CGC*GGUG
- Length
- 7 nucleotides
- Bulged bases
- 8RJC|1|K|G|2343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJC_086 not in the Motif Atlas
- Homologous match to IL_5TBW_057
- Geometric discrepancy: 0.0616
- The information below is about IL_5TBW_057
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- Isolated cWS basepair
- Motif group
- IL_73554.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8RJC|1|K|C|2290
8RJC|1|K|G|2291
8RJC|1|K|C|2292
*
8RJC|1|K|G|2342
8RJC|1|K|G|2343
8RJC|1|K|U|2344
8RJC|1|K|G|2345
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4
- Chain a
- 60S ribosomal protein L27a
- Chain e
- Ribosomal protein L32
- Chain r
- 60S ribosomal protein L28
- Chain v
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: