IL_8RJC_090

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_090 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.0766

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8RJC|1|K|G|2358
8RJC|1|K|U|2359
8RJC|1|K|A|2360
8RJC|1|K|G|2361
8RJC|1|K|U|2362
8RJC|1|K|A|2363
8RJC|1|K|G|2364
*
8RJC|1|K|C|3858
8RJC|1|K|G|3859
8RJC|1|K|A|3860
8RJC|1|K|A|3861
8RJC|1|K|A|3862
8RJC|1|K|C|3863

Current chains

Chain K

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4

Chain P

uL22