IL_8RJC_103
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- AACAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJC_103 not in the Motif Atlas
- Homologous match to IL_5TBW_074
- Geometric discrepancy: 0.1007
- The information below is about IL_5TBW_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
8RJC|1|K|A|2832
8RJC|1|K|A|2833
8RJC|1|K|C|2834
8RJC|1|K|A|2835
8RJC|1|K|A|2836
8RJC|1|K|U|2837
8RJC|1|K|G|2838
*
8RJC|1|K|C|3850
8RJC|1|K|U|3851
8RJC|1|K|A|3852
8RJC|1|K|U|3853
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain P
- uL22
- Chain d
- 60S ribosomal protein L31
- Chain w
- Ribosomal protein L3
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