IL_8RJC_129
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJC_129 not in the Motif Atlas
- Homologous match to IL_5TBW_100
- Geometric discrepancy: 0.247
- The information below is about IL_5TBW_100
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8RJC|1|K|U|4295
8RJC|1|K|U|4296
8RJC|1|K|G|4297
8RJC|1|K|A|4298
*
8RJC|1|K|U|4312
8RJC|1|K|A|4313
8RJC|1|K|C|4314
8RJC|1|K|A|4315
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain Q
- Ribosomal protein L18
- Chain T
- 60S ribosomal protein L21
- Chain b
- 60S ribosomal protein L29
- Chain o
- 60S ribosomal protein L36a-like
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