3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
CUCAGUAC*GGAACCG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8RJC_146 not in the Motif Atlas
Homologous match to IL_8C3A_125
Geometric discrepancy: 0.082
The information below is about IL_8C3A_125
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.8
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

8RJC|1|K|C|4596
8RJC|1|K|U|4597
8RJC|1|K|C|4598
8RJC|1|K|A|4599
8RJC|1|K|G|4600
8RJC|1|K|U|4601
8RJC|1|K|A|4602
8RJC|1|K|C|4603
*
8RJC|1|K|G|4608
8RJC|1|K|G|4609
8RJC|1|K|A|4610
8RJC|1|K|A|4611
8RJC|1|K|C|4612
8RJC|1|K|C|4613
8RJC|1|K|G|4614

Current chains

Chain K
28S rRNA

Nearby chains

Chain H
60S ribosomal protein L9
Chain V
Ribosomal protein L23
Chain m
eL40
Chain w
Ribosomal protein L3

Coloring options:


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