IL_8RJC_153

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_153 not in the Motif Atlas

Geometric match to IL_5TBW_100

Geometric discrepancy: 0.2395

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8RJC|1|K|G|4743
8RJC|1|K|A|4744
8RJC|1|K|G|4745
8RJC|1|K|C|4746
*
8RJC|1|K|G|4954
8RJC|1|K|A|4955
8RJC|1|K|A|4956
8RJC|1|K|C|4957

Current chains

Chain K

28S rRNA

Nearby chains

Chain f

60S ribosomal protein L35a

Chain v

5.8S ribosomal RNA; 5.8S rRNA