IL_8RJC_162

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

8RJC|1|K|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_162 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.1757

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8RJC|1|K|G|5000
8RJC|1|K|U|5001
8RJC|1|K|U|5002
*
8RJC|1|K|G|5045
8RJC|1|K|U|5046
8RJC|1|K|C|5047
8RJC|1|K|A|5048
8RJC|1|K|G|5049
8RJC|1|K|C|5050

Current chains

Chain K

28S rRNA

Nearby chains

Chain W

Ribosomal protein L24

Chain d

60S ribosomal protein L31

Chain w

Ribosomal protein L3