IL_8RXH_007
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CUCAGUGAG*CGAAGAG
- Length
- 16 nucleotides
- Bulged bases
- 8RXH|1|L1|G|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_007 not in the Motif Atlas
- Homologous match to IL_5TBW_006
- Geometric discrepancy: 0.1037
- The information below is about IL_5TBW_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8RXH|1|L1|C|80
8RXH|1|L1|U|81
8RXH|1|L1|C|82
8RXH|1|L1|A|83
8RXH|1|L1|G|84
8RXH|1|L1|U|85
8RXH|1|L1|G|86
8RXH|1|L1|A|87
8RXH|1|L1|G|88
*
8RXH|1|L1|C|96
8RXH|1|L1|G|97
8RXH|1|L1|A|98
8RXH|1|L1|A|99
8RXH|1|L1|G|100
8RXH|1|L1|A|101
8RXH|1|L1|G|102
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Putative 60S ribosomal protein L13
- Chain LL
- Putative 60S ribosomal protein L27A/L29
- Chain LM
- Ribosomal protein L15
- Chain LP
- 60S ribosomal protein L18
- Chain Lp
- Putative 60S ribosomal protein L44
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