IL_8RXH_013

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CA*UGAG

Length

6 nucleotides

Bulged bases

8RXH|1|L1|G|279, 8RXH|1|L1|A|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_013 not in the Motif Atlas

Geometric match to IL_3IGI_013

Geometric discrepancy: 0.1466

The information below is about IL_3IGI_013

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

8RXH|1|L1|C|176
8RXH|1|L1|A|177
*
8RXH|1|L1|U|278
8RXH|1|L1|G|279
8RXH|1|L1|A|280
8RXH|1|L1|G|281

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain LI

Putative 60S ribosomal protein L13

Chain La

Putative 60S ribosomal protein L35

Chain Lj

Ribosomal protein L37