IL_8RXH_035

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

AG*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_035 not in the Motif Atlas

Geometric match to IL_5TBW_085

Geometric discrepancy: 0.154

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8RXH|1|L1|A|588
8RXH|1|L1|G|589
*
8RXH|1|L1|U|619
8RXH|1|L1|U|620
8RXH|1|L1|U|621

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain LC

Putative ribosomal protein L1a

Chain Lc

Putative 60S ribosomal protein L7