IL_8RXH_039

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGC,GCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_039 not in the Motif Atlas

Geometric match to IL_4WZM_001

Geometric discrepancy: 0.1589

The information below is about IL_4WZM_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8RXH|1|L1|G|598
8RXH|1|L1|G|599
8RXH|1|L1|C|600
*
8RXH|1|L1|G|605
8RXH|1|L1|C|606
8RXH|1|L1|C|607

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain LC

Putative ribosomal protein L1a

Chain LS

Putative 60S ribosomal protein L21

Chain Lc

Putative 60S ribosomal protein L7