IL_8RXH_040
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- A(A2M)AC*G(OMU)UU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_040 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.2284
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8RXH|1|L1|A|696
8RXH|1|L1|A2M|697
8RXH|1|L1|A|698
8RXH|1|L1|C|699
*
8RXH|1|L1|G|846
8RXH|1|L1|OMU|847
8RXH|1|L1|U|848
8RXH|1|L1|U|849
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain LC
- Putative ribosomal protein L1a
- Chain LI
- Putative 60S ribosomal protein L13
- Chain LL
- Putative 60S ribosomal protein L27A/L29
- Chain LM
- Ribosomal protein L15
- Chain LP
- 60S ribosomal protein L18
Coloring options: