IL_8RXH_072
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- U(PSU)CG*C(OMG)GA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_072 not in the Motif Atlas
- Geometric match to IL_402D_001
- Geometric discrepancy: 0.3943
- The information below is about IL_402D_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_77658.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
8RXH|1|L1|U|1180
8RXH|1|L1|PSU|1181
8RXH|1|L1|C|1182
8RXH|1|L1|G|1183
*
8RXH|1|L1|C|1189
8RXH|1|L1|OMG|1190
8RXH|1|L1|G|1191
8RXH|1|L1|A|1192
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain L8
- 5S ribosomal RNA; 5S rRNA
- Chain LN
- Putative 60S ribosomal protein L10
- Chain Lb
- 60S ribosomal protein L29
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